Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
SARC rs11025902 chr11:21094710 A/G 1.98E-5 258 32.3 30.93 8.18 KM Plot
SARC rs11079776 chr17:45546893 C/T 8.97E-5 257 19.97 33.17 32.6 KM Plot
SARC rs11088343 chr21:37635652 C/T 3.64E-8 258 32.13 27.1 3.97 KM Plot
SARC rs11089449 chr22:30827805 T/C 4.15E-5 253 35.67 26.93 14.23 KM Plot
SARC rs11126257 chr2:70234623 A/G 8.52E-5 255 33.08 32.6 18.28 KM Plot
SARC rs11126258 chr2:70237472 G/T 3.93E-8 255 32.78 32.6 10.72 KM Plot
SARC rs111348973 chr2:37506657 A/G 4.15E-11 252 31.97 33.53 3.1 KM Plot
SARC rs111778071 chr3:53087119 GA/G 0 257 32.3 32.87 2.13 KM Plot
SARC rs1118333 chr11:55469933 G/A 1.61E-6 248 35.67 24.35 13.4 KM Plot
SARC rs112333492 chr4:908763 G/C 5.51E-5 247 34.83 36.47 15.93 KM Plot
SARC rs11236254 chr11:70274491 T/C 9.12E-5 256 29.25 36.02 23.03 KM Plot
SARC rs11236256 chr11:70274742 A/T 9.12E-5 256 29.25 36.02 23.03 KM Plot
SARC rs112438412 chr17:45556440 T/C 5.14E-5 257 19.97 33.18 33.18 KM Plot
SARC rs112440207 chr3:52982643 A/AATT 2.49E-14 252 30.85 35.37 1.17 KM Plot
SARC rs112645110 chr20:34185344 T/TC 0 249 31.97 32.3 1.07 KM Plot